分析测试百科网

搜索

喜欢作者

微信支付微信支付
×

JIP-test和主成分分析(PCA)在植物光合作用研究中的应用-4

2021.3.02
头像

王辉

致力于为分析测试行业奉献终身

总的来说通过PCA我们可以分类植物对各种环境因素的不同反应:
(i)找到特定处理下植物样品OJIP曲线发生的特异性变化
(ii)筛选出发生显著变化的JIP-test荧光参数及其变化特征,可更好对植物样品光合机构发生的变化(伤害)进行定位分析,如PSⅡ供体侧/受体测或PSⅡ活性中心等。
(iii)我们还可以将JIP-test荧光数据与其他环境数据或生理参数进行聚类结合(Goltsev et al. 2012)
(iv)此外Tyystjärvi等人应用PCA等人工智能方法分析不同类型光照(低光强、饱和脉冲、远红色等)激发的JIP-test荧光数据,可识别植物物种(Tyystjärvi et al. 1999; Keränen et al. 2003; Codrea et al. 2003;Kirova et al. 2009)
(v)Kalaji等人利用JIP-test、主成分分析(PCA)和一种新的机器学习方法建立了一种无创检测和监测大田条件下油菜籽微量和大量营养素缺乏的方法(Kalaji et al. 2017)
鉴于篇幅限制,我们将在下期文章中筛选数篇应用PCA方法分析JIP-test荧光数据具有代表性的文章进行详细介绍,期待您的关注,谢谢!

4.引用文献

[1] Appenroth, K.J., Stöckel, J., Srivastava, A.,Strasser, R.J., 2001. Multiple effects of chromate on the photosyntheticapparatus of Spirodela polyrhiza as probed by OJIP chlorophyll a fluorescencemeasurements. Environ. Pollut. 115, 49–64.
[2] Bussotti F, Gerosa G, Digrado A, Pollastrini M, 2020.Selection of chlorophyll fluorescence parameters as indicators of photosyntheticefficiency in large scale plant ecological studies. Ecol Indic 108: 105686.
[3] Bussotti, F., Strasser, R.J., Schaub, M., 2007.Photosynthetic behavior of woody species under high ozone exposure probed withthe JIP-test: a review. Environ. Pollut. 147, 430–437.
[4] Ceppi, M.G., Oukarroum, A., Cicek, N., Strasser,R.J., Schansker, G., 2012. The IP amplitude of the fluorescence rise OJIP issensitive to changes in the photosystem I content of leaves: a study on plantsexposed to magnesium and sulfate deficiencies, drought stress and salt stress. Physiol.Plant 144, 277–288.
[5] Chen, S.G., Xu, X.M., Dai, X.B., Yang, C.L., Qiang,S., 2007. Identification of tenuazonic acid as a novel type of naturalphotosystem II inhibitor binding in QB-site of Chlamydomonasreinhardtii. Biochim. Biophys. Acta 1767, 306–318.
[6] Chen, S.G., Zhou, F.Y., Yin, C.Y., Strasser, R.J.,Qiang, S., Yang, C.L., 2011. Application of fast chlorophyll a fluorescencekinetics to probe action target of 3-acetyl-5-isopropyltetramic acid. Environ.Exp. Bot. 71, 269–279.
[7] Christen, D., Schönmann, S., Jermini, M., Strasser,R.J., Défago, G., 2007. Characterization and early detection of grapevine (Vitisvinifera) stress responses to esca disease by in situ chlorophyllfluorescence and comparison with drought stress. Environ. Exp. Bot. 60,504–514.
[8] Clark, A.J., Landolt, W., Bucher, J.B., Strasser,R.J., 2000. Beech (Fagus sylvatica) response to ozone exposure assessedwith a chlorophyll a fluorescence performance index. Environ. Pollut.109, 501–507.
[9] Codrea C, Aittokallio T, Keränen M et al(2003) Feature learning with a genetic algorithm for fluorescencefingerprinting of plant species. Pattern Recognit Lett 24:2663–2673.
[10] Demetriou, G., Neonaki, C., Navakoudis, E.,Kotzabasis, K., 2007. Salt stress impact on the molecular structure andfunction of the photosynthetic apparatus—the protective role of polyamines. Biochim.Biophys. Acta 1767, 272–280.
[11] Frani M, Jambrovi A, Zduni Z, et al. Photosyntheticproperties of maize hybrids under different environmental conditions probed bythe chlorophyll a fluorescence[J]. Maydica, 2020, 64(3):M25.
[12] Galić V, Mazur M, Šimić D, Zdunić Z, Franić M, 2019.Plant biomass in salt-stressed young maize plants can be modelled with photosyntheticperformance. Photosynthetica 57: 9-19.
[13] Goltsev V, Zaharieva I, Chernev P et al (2012)Drought-induced modifications of photosynthetic electron transport in intactleaves: analysis and use of neural networks as a tool for a rapid non-invasiveestimation. Biochim Biophys Acta-Bioenerg 1817:1490–1498.
[14] Gururani, M.A., Venkatesh, J., Ganesan, M.,Strasser, R.J., Han, Y., Kim, J.I., Lee, H.Y., Song, P.S., 2015. In vivoassessment of cold tolerance through chlorophyll-a fluorescence in transgeniczoysiagrass expressing mutant phytochrome A. PLoS One 10, e0127200.
[15] Hermans C, Smeyers M, Rodriguez RM, Eyletters M,Strasser RJ, Delhaye JP (2003). Quality assessment of urban trees: Acomparative study of physiological characterization, airborne imaging and onsite of fluorescence monitoring by the OJIP-test. J Plant Physiol, 160:81–90.
[16] Hermans, C., Johnson, G.N., Strasser, R.J.,Verbruggen, N., 2004. Physiological characterisation of magnesium deficiency insugar beet: acclimation to low magnesium differentially affects photosystems Iand II. Planta 220, 344–355.
[17] Hu, K., Govindjee, G., Tan, J., Xia, Q., Dai, Z. andGuo, Y. Co-author and co-cited reference network analysis for chlorophyllfluorescence research from 1991 to 2018. Photosynthetica, 2020, vol. 58,iss. 1, p. 110-124.
[18] Jiang CD, Gao HY, Zou Q (2003). Changes of donorand accepter side in photosystem II complex induced by iron deficiency inattached soybean and maize leaves. Photosynthetica, 41: 267–271.
[19] Jolliffe, I.T., 2002. Graphical representation ofdata using principal components. In: Jolliffe, I.T. (Ed.), Principal ComponentAnalysis, Springer Series in Statistics. Springer, New York, pp. 78-110.
[20] Kalaji H M, BaBa W , Gediga K , et al. Chlorophyllfluorescence as a tool for nutrient status identification in rapeseedplants[J]. Photosynthesis Research, 2017.
[21] Kalaji H M, Oukarroum A, Alexandrov V, et al.Identification of nutrient deficiency in maize and tomato plants by in vivochlorophyll a fluorescence measurements[J]. Plant Physiology &Biochemistry, 2014, 81:16-25.
[22] Kalaji, H.M., Carpentier, R., Allakhverdiev, S.L.,Bosa, K., 2012. Fluorescence parameters as early indicators of light stress inbarley. J. Photochem. Photobiol. B: Biol. 112, 1–6.
[23] Keränen M, Aro EM, Tyystjärvi E, Nevalainen O(2003) Automatic plant identification with chlorophyll fluorescencefingerprinting. Precis Agric 4:53–67.
[24] Kirova M, Ceppi G, Chernev P et al (2009)Using artificial neural networks for plant taxonomic determination based onchlorophyll fluorescence induction curves. Biotechnol Biotechnol Equip23:941–945.
[25] Krüger, G.H.J., Tsimilli-Michael, M., Strasser,R.J.,1997. Light stress provokes plastic and elastic modifications instructureand function of photosystem II in camellia leaves. Physiol. Plant. 101,265–277.
[26] Lazár, D., 2003. Chlorophyll a fluorescence riseinduced by high light illumination of dark-adapted plant tissue studied bymeans of a model of photosystem II and considering photosystem IIheterogeneity. J. Theor. Biol. 220, 469–503.
[27] Legendre P, Legendre L (2012) Numerical ecology,3rd edn. Elsevier, Amsterdam.
[28] Li, X., Zhang, L., 2015. Endophytic infectionalleviates Pb2+ stress effects on photosystem II functioning of Oryzasativa leaves. J. Hazard. Mater. 295, 79–85.
[29] Lu, C.M., Zhang, J.H.,1999. Heat-induced multipleeffects on PSII in wheat Plants. J. Plant Physiol. 156, 259–265.

[30] Mathur, S., Allakhverdiew, S.I., Jajoo,A.,2011.Analysis of high temperature stress on the dynamic of antenna size andreducing side heterogeneity of photosystem II in wheat leaves (Triticumaestivum). Biochim. Biophys. Acta 1807, 22–29.[31] Meinander, O., Somersalo, S., Holopainen, T.,Strasser, R.J., 1996. Scots pines after exposure to elevated ozone and carbondioxide probed by reflectance spectra and chlorophyll a fluorescencetransients. J. Plant Physiol. 148, 229–236.
[32] Misra, A.N., Srivastava, A., Strasser, R.J., 2001.Utilization of fast chlorophyll a fluorescence technique in assessing thesalt/ion sensitivity of mung bean and Brassica seedlings. J. Plant Physiol.158, 1173–1181.
[33] Nussbaum, S., Geissmann, M., Eggenberg, P.,Strasser, R.J., Fuhrer, J., 2001. Ozone sensitivity in herbaceous species asassessed by direct and modulated chlorophyll fluorescence techniques. J.Plant Physiol. 158, 757–766.
[34] Oukarroum, A., Madidi, S. E., Schansker, G.,Strasser, R.J., 2007. Probing the responses of barley cultivars (Hordeumvulgare L.) by chlorophyll a fluorescence OLKJIP under drought stress andre-watering. Environ. Exp. Bot 60, 438–446.
[35] Oukarroum, A., Schansker, G., Strasser, R.J., 2009.Drought stress effects on photosystem I content and photosystem IIthermotolerance analyzed using Chl a fluorescence kinetics in barley varietiesdiffering in their drought tolerance. Physiol. Plant 137, 188–199.
[36] Ouzounidou, G., Moustakas, M., Strasser, R.J.,1997. Sites of action of copper in the photosynthetic apparatus of maizeleaves: kinetics analysis of chlorophyll fluorescence, oxygen evolution,absorption changes and thermal dissipation as monitored by photoacousticsignals. Aust. J. Plant Physiol. 24, 81–90.
[37] Pollastrini, M., Desotgiu, R., Camin, F., Ziller,L., Gerosa, G., Marzuoli, R., Bussotti, F., 2014. Severe drought eventsincrease the sensitivity to ozone on poplar clones. Environ. Exp. Bot.100, 94–104.
[38] Pontes. D, Ontes, M., Rodriguez, R. and Santiago,E.F. Letter to The Editor. The energy flux theory celebrates 40 years: toward asystems biology concept? Photosynthetica, 2019, vol. 57, iss. 2, p.521-522.
[39] Rivera-Becerril, F., Calantzis, C., Turnau, K.,Caussanel, J., Belimov, A. A., Gianinazzi,S., Strasser, R.J., Gianinazzi-Pearson,V., 2002. Cadmium accumulation and buffering of cadmium-induced stress byarbuscular mycorrhiza in three Pisum sativum L. genotypes. J. Exp.Bot. 53, 1177–1185.
[40] Roccotiello, E., Manfredi, A., Drava, G., Minganti,V., Mariotti, M.G., Berta, G., Cornara, L., 2010. Zinc tolerance andaccumulation in the ferns Polypodium cambricum L. and Pteris vittataL. Ecotoxicol. Environ. Saf. 73, 1264–1271.
[41] Samborska IA, Alexandrov V, Sieczko L et al (2014)Artificial neural networks and their application in biological and agriculturalresearch. Sigpost Open Access J Nano Photo Bio Sciences 2:14–30.
[42] Schansker, G., Tóth, S.Z., Strasser, R.J., 2005.Methylviolegen and dibromothymoquinone treatments of pea leaves reveal the roleof photosystem I in the Chl a fluorescence rise OJIP. Biochim. Biophys. Acta1706, 250–261.
[43] Sekhar, K.M., Rachapudi, V.S., Mudalkar, S., Reddy,A.R., 2014. Persistent stimulation of photosynthesis in short rotation coppicemulberry under elevated CO2 atmosphere. J. Photochem. Photobiol.B: Biol. 137, 21–30.
[44] Srivastava, A., Guissé, B., Greppin, H., Strasser,R.J., 1997. Regulation of antenna structure and transport in photosystem II of Pisumsativum under elevated temperature probed by fast polyphasic chlorophyll afluorescence transient: OKJIP. Biochim. Biophys. Acta 1320, 95–106.
[45] Srivastava, A., Jüttner, F., Strasser, R.J., 1998.Action of the allelochemical, fischerellin A, on photosystem II. Biochim.Biophys. Acta 1364, 326–336.
[46] Srivastava, A., Strasser, R.J., Govindjee, 1995.Differential effects of dimethylbenzoquinone and dichlorobenzoquinone onchlorophyll fluorescence transient in spinach thylakoids. J. Photochem.Photobiol. B: Biol. 31, 163–169.
[47] Stirbet A, Lazár D, Kromdijk J, Govindjee, 2018. Chlorophylla fluorescence induction: Can just a one-second measurement be used to quantifyabiotic stress responses? Photosynthetica 56: 86-104.
[48] Strasser BJ, Strasser RJ (1995). Measuring fastfluorescence transients to address environmental questions: The JIP test. In:Mathis P (eds). Photosynthesis: from Light to Biosphere. Dordrecht: KAPPress, Vol 5: 977-980.
[49] Strasser RJ, Srivastava A, Tsimilli-Michael M(2000). The fluorescence transient as a tool to characterize and screenphotosynthetic samples. In: Yunus M, Pathre U, Mohanty P (eds). ProbingPhotosynthesis: Mechanism, Regulationand Adaptation. London: Taylor andFrancis Press, 445–483.
[50] Strasser RJ, Tsimill-Michael M, Srivastava A(2004). Analysis of the chlorophyll a fluorescence transient. In: PapageorgiouG, Govindjee(eds). Advances in Photosynthesis and Respiration.Netherlands: KAP Press, 1–42.
[51] Strasser, B.J., 1997. Donor side capacity ofPhotosystem II probed by chlorophyll a fluorescence transients. Photosynth.Res. 52, 147–155.
[52] Strasser, R.J., Tsimilli-Michael, M., Qiang, S.,Goltsev, V., 2010. Simultaneous in vivo recording of prompt and delayedfluorescence and 820-nm reflection changes during drying and after rehydrationof the resurrection plant Haberlea rhodopensis. Biochim. Biophys. Acta1313–1326.
[53] Strauss, A.J., Krüger, G.H.J., Strasser, R.J., vanHeerden, P.D.R., 2006. Ranking of dark chilling tolerance in soybean genotypesprobed by the chlorophyll a fluorescence transient O-J-I-P. Environ. Exp.Bot. 56, 147–157.
[54] Strauss, A.J., Krüger, G.H.J., Strasser, R.J., vanHeerden, P.D.R., 2007. The role of low soil temperature in the inhibition ofgrowth and PSII function during dark chilling in soybean genotypes ofcontrasting tolerance. Physiol. Plant 131, 89–105.
[55] Strivastava A, Strasser RJ (1996). Stress andstress management of land plants during a regular day. J Plant Physiol,148: 445–455.
[56] Susplugas, S., Srivastava, A., Strasser, R.J.,2000. Changes in the photosynthetic activities during several stages ofvegetative growth of Spirodela polyrhiza: effect of chromate. J. PlantPhysiol. 157, 503–512.
[57] Tóth, S.Z., Schansker, G., Garab, G., Strasser,R.J., 2007. Photosynthetic electron transport activity in heat-treated barleyleaves: the role of internal alternative electron donors to photosystem II. Biochim.Biophys. Acta 1767, 295–305.
[58] Tóth, S.Z., Schansker, G., Kissimon, J., Kovacs,L., Garab, G., Strasser, R.J., 2005b. Biophysical studies of photosystemII-related recovery processes after a heat pulse in barley seedlings (Hordeumvulgare L.). J. Plant Physiol. 162, 181–194.
[59] Tóth, S.Z., Schansker, G., Strasser, R.J., 2005a.In intact leaves, the maximum fluorescence level (FM) isindependent of the redox state of the plastoquinone pool: a DCMU-inhibitionstudy. Biochim. Biophys. Acta 1708, 275–282.
[60] Tsimilli-Michael, M., Eggenberg, P., Biro, B.,Köves-Pechy, K., Vörös, I., Strasser, R.J., 2000. Synergistic and antagonisticeffects of arbuscular mycorrhizal fungi and Azospirillum and Rhizobiumnitrogen-fixers on the photosynthetic activity of alfalfa, probed by thepolyphasic chlorophyll a fluorescence transient O-J-I-P. Appl. Soil Ecol.15, 169–182.
[61] Tyystjärvi E, Koski A, Keränen M, Nevalainen O(1999) The Kautsky curve is a built-in barcode. Biophys J 77:1159–1167.
[62] van Heerden PDR, Strasser RJ, Krüger GHJ (2004).Reduction of dark chilling stress in N 2 -fixing soybean by nitrate asindicated by chlorophyll a fluorescence kinetics. Physiol Plant, 121:239–249.
[63] van Heerden PDR, Tsimilli-Michael M, Krüger GHJ,Strasser RJ (2003). Dark chilling effects on soybean genotypes duringvegetative development: parallel studies of CO2 assimilation,chlorophyll a fluorescence kinetics O-J-I-P and nitrogen fixation. PhysiolPlant, 117: 476–491.
[64] Xia, J.R., Li, Y.J., Zou, D.H., 2004. Effects ofsalinity stress on PSII in Ulva lactuca as probed by chlorophyll fluorescencemeasurements. Aquat. Bot. 80, 129–137.
[65] Xiang, M.M., Chen, S.G., Wang, L.S., Dong, Z.Y.,Huang, J.H., Zhang, Y.X., Strasser, R.J., 2013. Effect of vulculic acidproduced by Nimbya alternantherae on the photosynthetic apparatus of Alternanthera.philoxeroides. Plant Physiol. Biochem 65, 81–88.
[66] Yadavalli, V., Neelam, S., Rao, A.S.V.C., Reddy,A.R., Subramanyam, R., 2012. Differential degradation of photosystem I subunitsunder iron deficiency in rice. J. Plant Physiol. 169, 753–759.


互联网
文章推荐